PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G15600.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TCP
Protein Properties Length: 204aa    MW: 21637.6 Da    PI: 9.8202
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G15600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP107.61.9e-3356146989
              TCP   9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec.eaesssssasnsssg........k 89 
                      +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++ +a  +c +a ss+  + + + g         
  LPERR04G15600.1  56 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTAPAvFSCsSAPSSVLGKRHRQDGdgfdepppP 146
                      89*******************************************************9988855555555555555544444445555551 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.00955109IPR017887Transcription factor TCP subgroup
PfamPF036345.6E-2955131IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MASRDLATFQ VYRPMAMPTP SAPLPSQQIT MPFAAAPPAD AAVLPAPPRK ACGGGKDRHS  60
KVNGRGRRVR MPIVCAARVF QLTRELGLKS DGQTIEWLLR QAEPSILAAT GSGTAPAVFS  120
CSSAPSSVLG KRHRQDGDGF DEPPPPSLSF WEALHQPPRP VLSAWGISQE AQAYASSVAH  180
VQHLNLLSAL SGGSAATRRI AEEE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0647081e-115AK064708.1 Oryza sativa Japonica Group cDNA clone:002-118-B01, full insert sequence.
GenBankAL6630191e-115AL663019.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence.
GenBankAP0149601e-115AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-115CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552301e-115CR855230.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0115K01-H0319F09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635777.14e-87PREDICTED: transcription factor TCP21
SwissprotQ9FMX26e-38TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A0D9W7D01e-147A0A0D9W7D0_9ORYZ; Uncharacterized protein
STRINGBGIOSGA016791-PA7e-88(Oryza sativa Indica Group)
STRINGORGLA04G0163700.17e-88(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.15e-38TCP family protein